1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgatttttgtaataagaactaagaaattaccttacattcacaacaacagtatttaagagcccatgttttggattggattggatactcttgttgatgcagATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGTAATAGAATAACTCTCAAGAAGGACTTCAATGGAAGATATCTCTACTCAC
species | Glycine max |
transcript | GLYMA05G26230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTAATTCTCTACTCTCTCACTTCTTTCTATCACATTTTACTTGCAAG ATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGTEST: gi|209703854|gb|BW670736.1|BW670736
genomic: CTTCTAATTCTCTACTCTCTCACTTCTTTCTATCACATTTTACTTGCAAGgtatgtatgt ... gttgatgcagATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
EST: CTTCTAATTCTCTACTCTCTCACTTCTTTCTATCACATTTTACTTGCAAG ATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGTEST: gi|209722322|gb|BW665819.1|BW665819
genomic: CTTCTAATTCTCTACTCTCTCACTTCTTTCTATCACATTTTACTTGCAAGgtatgtatgt ... gttgatgcagATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
EST: CTTCTAATTCTCTACTCTCTCACTTCTTTCTATCACATTTTACTTGCAAG ATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
genomic: CTTCTAATTCTCTACTCTCTCACTTCTTTCTATCACATTTTACTTGCAAGgtatgtatgt ... gttgatgcagATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
aacagtatttaagagcccatgttttggattggattggatactcttgttgatgcagATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGTAATAGAATAACTCTCAAGAAGGACTTCAATGGAAGATATCTCTACTCAC
tgttgat putative branch site (score: 4)
ctcttgtt CT-rich tract
tatttaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatttttgtaataagaactaagaaattaccttacattcacaacaacagtatttaagagcccatgttttggattggattggatactcttgttgatgcagATGGCAGCGTCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGTAATAGAATAACTCTCAAGAAGGACTTCAATGGAAGATATCTCTACTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - -aataagaa
- - - - - - - - - - - - - - - ccttaca
- - - - - - - - - - - - - - - - - - - -cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtt