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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcccaaacattctgtattctcgtttgtgttactttctccttcttcatttctaacgagtttgtgttgaatcattagGTCGGGAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCTCAAGCGCCACCGCCTTATCGTCAACATCTCCGATCTCCACAACTTCCGCGACT

Basic information

species Glycine max
transcript GLYMA05G25980.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25980.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 1
gtatgtcccaaacattctgtattctcgtttgtgttactttctccttcttcatttctaac----gagtttgtgttgaatcattagGTCGGGAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCTCAAGCGCCACCGCCTTATCGTCAACATCTCCGATCTCCACAACTTCCGCGACT-
         || |||||    |     | | | ||  | ||| ||   || | ||||||    || |||        |||| || | || ||||| || ||||| || ||||||||| || | ||||||| ||||||||| ||||| ||| | ||||| |||||||||||  ||| |||| ||| 
-------gtaatcattccccctctctatctctcttcttctctactagctc-tctctaacctttgatttttctcattttcatcagATTGGAAAGGGTATTTACATCGATGAAATCAAAGCCATGATCAACCACAAGCGCCATCGCCTCATCCTTAACATTTCCGATCTCCATGACTACCGC-ACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttgtgttactttctccttcttcatttctaacgagtttgtgttgaatcattagGTCGGGAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCTCAAGCGCCACCGCCTTATCGTCAACATCTCCGATCTCCACAACTTCCGCGACT
                           ttctaac  putative branch site (score: 1)
                         atttctaa  TA-rich tract