1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tggttgtagcttgtattgtatgtagcgattatatcatgggtttggtatttgaaataattgagatggctaggcctagggctaattggtgatgctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCTTGGTACTTGCCCAGTGAGGCAGATTGGTGGATGCTCTTTCTTTTACATG
species | Glycine max |
transcript | GLYMA05G23670.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGG GGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCTEST: gi|21887371|gb|BQ740584.1|BQ740584
genomic: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaatccagt ... gctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
EST: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGG GGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCTEST: gi|24136425|gb|BU926935.1|BU926935
genomic: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaatccagt ... gctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
EST: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGG GGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
genomic: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaatccagt ... gctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
tatttgaaataattgagatggctaggcctagggctaattggtgatgctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCTTGGTACTTGCCCAGTGAGGCAGATTGGTGGATGCTCTTTCTTTTACATG
ggctaat putative branch site (score: 3)
aaataattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttgtagcttgtattgtatgtagcgattatatcatgggtttggtatttgaaataattgagatggctaggcctagggctaattggtgatgctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCTTGGTACTTGCCCAGTGAGGCAGATTGGTGGATGCTCTTTCTTTTACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-ggttgta
- - - - gcttgta
- - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attggtg