1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgaataaactaatagcaaacagtgattgaatactttaatgaactttttttcctattttagattatttgtttgacggttggtattccttgacatgtactagTGATTATTTGAATCGTCTAAATCAATATCGCCAGAGGGTTTGGACTTGTAAAATTACTGGAAAATCTGGCTTGACTTATGAAGAGGCTCTGGTGTCAGAG
species | Glycine max |
transcript | GLYMA05G21910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTGTGCTCCGACTGCAACACTCTCTCTGAGTACGTCAAGGAC-AAG TGATTATTTGAATCGTCTAAATCAATATCGCCAGAGGGTTTGGACTTGTAAEST: gi|10846652|gb|BF069488.1|BF069488
genomic: TGTCTTGTGCTCCGACTGCAACACTCTCTCTGAGTACGTCAAGGACAAAGgtttattccg ... catgtactagTGATTATTTGAATCGTCTAAATCAATATCGCCAGAGGGTTTGGACTTGTAA
EST: TGTCTTGTGCTCCGACTGCAACACTCTCTCTGAGTACGTCAAGGACAAAG TGATTATTTGAATCGTCTAAATCAATATCGCCAGAGGGTTTGGACTTGTAA
genomic: TGTCTTGTGCTCCGACTGCAACACTCTCTCTGAGTACGTCAAGGACAAAGgtttattccg ... catgtactagTGATTATTTGAATCGTCTAAATCAATATCGCCAGAGGGTTTGGACTTGTAA
tttttcctattttagattatttgtttgacggttggtattccttgacatgtactagTGATTATTTGAATCGTCTAAATCAATATCGCCAGAGGGTTTGGACTTGTAAAATTACTGGAAAATCTGGCTTGACTTATGAAGAGGCTCTGGTGTCAGAG
ccttgac putative branch site (score: 4)
tattttagattatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaataaactaatagcaaacagtgattgaatactttaatgaactttttttcctattttagattatttgtttgacggttggtattccttgacatgtactagTGATTATTTGAATCGTCTAAATCAATATCGCCAGAGGGTTTGGACTTGTAAAATTACTGGAAAATCTGGCTTGACTTATGAAGAGGCTCTGGTGTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-gaataaac
- - - - - - - gcaaaca
- - - - - - - - - - -gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccttg