Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaacctattacgtcgtcgtttaacgcgctttctttcttcttcttcttcttcttcttcttcgcttcttaaatcaaaattcggtaattcgagatttgtgtgaattgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGC
Basic information
species | Glycine max |
transcript | GLYMA05G21800.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaaaacctattacgtcgtcgtttaacgcgctttctttcttcttcttcttcttcttcttcttcgcttcttaaatcaaaattcggtaattcgagatttgtgtga-attgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGC
| ||| ||| | | | || || | | ||| | | || ||| | | ||| || || ||| |||||||||||| ||| |||||||||| ||||| || || || ||||||||||| || |||||| | || || |||||||| |||||||| || || |||
----------------------------------------gtaatctccttttccatatttcccgat--ctgggtcatgtaaagatgtctct---tttatatactattatatcgtatttgtagGTATTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGT
upper sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
gtaaaaacctattacgtcgtcgtttaacgcgctttctttcttcttcttcttcttcttcttcttcgcttcttaaatcaaaattcggtaattcgagatttgtgt-gaattgaa-tggtttttttagGTATTACACGACGCGGCTTTGGATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGC
| | | ||| || || || |||| | | | || ||| |||||| ||||||| || || ||||||||||||||| ||| || |||||||||| || || || |||| ||||| |||||||||||||||||||| ||| ||||||||||||| ||||| || |||
---------------------------------------gtacccggtgttcctcccctcttttttttctcgattgcattcattttatttctgttcttgtgttgaattgaggtgcttcttttagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttaaatcaaaattcggtaattcgagatttgtgtgaattgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGC
ttttttt CT-rich tract
aatcaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaacctattacgtcgtcgtttaacgcgctttctttcttcttcttcttcttcttcttcttcgcttcttaaatcaaaattcggtaattcgagatttgtgtgaattgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA