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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaattaataatttccttccatttcatgaaaattgtgtttctttttccttctcgacaatcaaaatttgatttgttttttttttttttctggttctatttgtgttgcagGGATTGTGGAAAACAAGTGTATCTAG

Basic information

species Glycine max
transcript GLYMA05G18170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193474410|gb|FK440841.1|FK440841
EST:     AGAGGAGCCACCTTCTACAGAAGAACGGGTCGCTGGGAGTCTCATATATG                         GGATTGTGGAAAACAAGTGTATCTAG
genomic: AGAGGAGTCACCTTCTACAGAAGAACGGGTCGCTGGGAGTCTCATATATGgttagtaatt ... tgtgttgcagGGATTGTGGAAAACAAGTGTATCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaatcaaaatttgatttgttttttttttttttctggttctatttgtgttgcagGGATTGTGGAAAACAAGTGTATCTAG
          atttgat  putative branch site (score: 5)
                tttgtttttttttttt  CT-rich tract
     tcaaaatttgatttgt  TA-rich tract