1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ggaaattttatgattgtaaagatgtatggaaagatgtggtgtatattaggttctgagaagatggtgactgttgatgaccaacttcaactttaacatacagGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAAT
species | Glycine max |
transcript | GLYMA05G07960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTG GGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGEST: gi|192295605|gb|FG988179.1|FG988179
genomic: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTGgttagttttt ... taacatacagGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
EST: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTG GGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGEST: gi|193318730|gb|FK284236.1|FK284236
genomic: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTGgttagttttt ... taacatacagGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
EST: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTG GGTAATA-TTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
genomic: ACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTGgttagttttt ... taacatacagGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAG
ttaggttctgagaagatggtgactgttgatgaccaacttcaactttaacatacagGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAAT
ctttaac putative branch site (score: 3)
tttaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaattttatgattgtaaagatgtatggaaagatgtggtgtatattaggttctgagaagatggtgactgttgatgaccaacttcaactttaacatacagGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAAT
- - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaact