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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatctttcaaatcaacccttttatgggtctcaatccgttttcttgttttctctcaattttttcatttgcatggctttctctctcaccgtcgtgggaaaaagtgatgatctttttgttctattttttgtggggtgtgttgaaaagggtttatcgtttgtttgttgcgtctgattcgcagGTTGAATGCACGATTCCAAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCTCGTGGTCCTATGAAGGGAGGGATTC

Basic information

species Glycine max
transcript GLYMA05G05460.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G05460.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G07440.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaatcatctttcaaatcaacccttttatgggtctcaatccgttttcttgttttctctcaattttttcatttgcatggctttctctctcaccgtcgtgggaaaaagtgatgatctttttgttctattttttgtggggtgtgttgaaaagggtttatcgtttgtttgttgcgtctgattcgcagGTTGAATGCACGATTCCAAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCTCGTGGTCCTATGAAGGGAGGGATTC
                                                                        |  || |||| | | |  |  | |        ||   | |   |||||||   ||||| | |     |  |   ||   ||  | |  | ||| || | | |||||  |||||||| || |||||||| || || ||||| ||||||||||| ||  | ||||| ||| | |||||||| ||||||||||| || ||||| || || ||  
------------------------------------------------------------------------gtttgacttttttttttccttttg--------aggttttactcttttgtttcgtttttggggaaaattcgtctcaatctttgtttggat-ttttttacttttgattt-cagGTTGAGTGTACGATTCCTAAAGACGATGGCACTCTGGTTTCATACATCGGATTTAGGGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820671|gb|BE556181.1|BE556181
EST:     TGGATTCCAAGCTTGAGAAGAGCCTCCTCATACCCTTCAGAGAAGTCAAA                         GTTGAATGCACGATTCCAAAGGATGATGGAACTCTGGTTTCCTATGTGGGA
genomic: TGGATTCCAAGCTTGAGAAGAGCCTCCTCATACCCTTCAGAGAAGTCAAAgtaatcatct ... tgattcgcagGTTGAATGCACGATTCCAAAGGATGATGGAACTCTGGTTTCCTATGTGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtggggtgtgttgaaaagggtttatcgtttgtttgttgcgtctgattcgcagGTTGAATGCACGATTCCAAAGGATGATGGAACTCTGGTTTCCTATGTGGGATTCAGGATCCAACATGATAATGCTCGTGGTCCTATGAAGGGAGGGATTC
                                          gtctgat  putative branch site (score: 4)
             ttgaaaa  TA-rich tract