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...gaaggtttcaattttaatgagaaaaaaagatgattttgatagtgctgcacgaagggcttagatttaatcaaatatgggtttttgatggttacccttgcagGTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACTGAGAATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGA
species | Glycine max |
transcript | GLYMA05G04160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTG GTGTGGCTGTGGAATCCTCTTTATTC-AGCCAG-GGTTGCATAACTTGCAAEST: gi|21677977|gb|BQ630328.1|BQ630328
genomic: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTGgtcactcacc ... acccttgcagGTGT-GCTGTTGAATCCTCTTTATTCAAG-CAGTGGTTGCATAACTTGCAA
EST: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTG GTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACEST: gi|15813432|gb|BI785707.1|BI785707
genomic: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTGgtcactcacc ... acccttgcagGTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAAC
EST: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTG GTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACEST: gi|298173390|gb|HO016726.1|HO016726
genomic: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTGgtcactcacc ... acccttgcagGTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAAC
EST: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTG GTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAAC
genomic: GAACCTGTTCACATTGTTGCTGCTCCCGGTGTCTCCAATTCTGATTTCTGgtcactcacc ... acccttgcagGTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAAC
tgcacgaagggcttagatttaatcaaatatgggtttttgatggttacccttgcagGTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACTGAGAATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGA
ttttgat putative branch site (score: 4)
ttaccctt putative PPT
ttagatttaatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaggtttcaattttaatgagaaaaaaagatgattttgatagtgctgcacgaagggcttagatttaatcaaatatgggtttttgatggttacccttgcagGTGTGCTGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACTGAGAATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - -gatagtg
- - - - - - - - - - - - - - - - - - - - - - -tgcacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtt