1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttaggtcccttatgtctcttcttatcatttttcaaataattattttgttttggtttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAG
species | Glycine max |
transcript | GLYMA05G03930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGEST: gi|51336716|gb|CO980582.1|CO980582
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
EST: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGEST: gi|20811949|gb|BQ296427.1|BQ296427
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
EST: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGEST: gi|9901632|gb|BE610600.1|BE610600
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
EST: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAG ATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
genomic: ACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGgttaggtccc ... ttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATG
ttatgtctcttcttatcatttttcaaataattattttgttttggtttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAG
tcttcttatcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggtcccttatgtctcttcttatcatttttcaaataattattttgttttggtttggtttcagATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA