Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcgtctccttagttataacggtgttttgtttgaggtttcgatctttggttttaaataatgtgggctgttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACCATGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTT

Basic information

species Glycine max
transcript GLYMA05G02800.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02800.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os09g39180.1 (Oryza sativa), 3'ss of exon 1
-------------gtgagtgcgtctccttagttataacggtgttttgtttgaggtttcgatcttt-ggttttaaat-aatgtgggctgttgt---ttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACCATGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTT
               |  |        ||||  | ||   |    | |    ||||| | ||||| | |   |||| ||  |    | | |    ||||||| || || || || |  || || ||||||||||| ||||||||||| |||||||| ||  |||| |||  | |||||||||| |||||||||  | | |
tttattatgtgaaccgtatagaggcagttagacaaaatattaggatatgcatggttttgttcttttgatcagaaatgaacctctattttcgcgtgttcagGTCATCTACAACAGAGAAACAGATCGGAGTCGTGGATTTGGATTTGTCACCATGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCT

upper sequence: GLYMA05G02800.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G24770.1 (Arabidopsis thaliana), 3'ss of exon 1
-------gtgagtgcgtctccttagttataacggt---gttttgtttgaggtttcg-atctttggttttaaataatg---tgggctgttgtt----tcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACCATGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTT
        |||     |    || ||| |  |  |    ||| |||  ||   |    |  || ||  | | |  |    ||   | ||||     | ||||||| || |||||||  ||||||| ||||||||||||||||||||| || |||||| |  | || ||   | |||  ||||| |||| |||||   |||
atatctgttgacattatacttttggttctctcttttttatttagttcaagagataatgttgttagtcctgacttgttctttgaattcttgtggttgtaagGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTTGGATTTGTGACAATGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691815|gb|AW759935.1|AW759935
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGGTGAGGTTGCTGAG                         GTTATTTATAATANGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192307957|gb|FG998960.1|FG998960
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192297875|gb|FG988345.1|FG988345
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|20449170|gb|BQ253294.1|BQ253294
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192316783|gb|FK006486.1|FK006486
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCGCTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|26048991|gb|CA785444.1|CA785444
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|6134513|gb|AW132906.1|AW132906
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|208284907|gb|GE082053.1|GE082053
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|9901229|gb|BE610197.1|BE610197
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|11274443|gb|BF324796.1|BF324796
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|7926371|gb|AW832397.1|AW832397
EST:     AGAATTTGGCGTCACTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATATATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|10235279|gb|BE804116.1|BE804116
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|5820123|gb|AI988329.1|AI988329
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTTGAATTTGTTAC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGG-TTTGGATTTGTTAC
EST: gi|151396834|gb|EV266707.1|EV266707
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192326482|gb|FK017259.1|FK017259
EST:     AGAATGTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|16105252|gb|BI892992.1|BI892992
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192316782|gb|FK006485.1|FK006485
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCGCTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192295342|gb|FG985996.1|FG985996
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|20813412|gb|BQ297890.1|BQ297890
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192294108|gb|FG986197.1|FG986197
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|6482006|gb|AW201277.1|AW201277
EST:     GAATTTGGCGTCGCTCTTCGGGCACGCTGGCACCGTTGAGGTTGCTGGAG                         GTAATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGATAC
genomic: GAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTG-AGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTAC
EST: gi|13481705|gb|BG511048.1|BG511048
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|23056838|gb|BU577802.1|BU577802
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|6454738|gb|AW185421.1|AW185421
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|298171394|gb|HO016426.1|HO016426
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|8669648|gb|BE190755.1|BE190755
EST:     AGAATTTGGCGTCGCTCTTTGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|20075504|gb|BQ094287.1|BQ094287
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|20075534|gb|BQ094317.1|BQ094317
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|18735126|gb|BM528579.1|BM528579
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGNNNNN
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|209721088|gb|BW666349.1|BW666349
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|23064530|gb|BU579303.1|BU579303
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|209719484|gb|BW650989.1|BW650989
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|213599012|gb|DB971984.1|DB971984
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|6454674|gb|AW185357.1|AW185357
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|8669118|gb|BE190225.1|BE190225
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|151399377|gb|EV269248.1|EV269248
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|23056167|gb|BU577707.1|BU577707
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|209712692|gb|BW684622.1|BW684622
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTNNGGTAC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTT-GTTAC
EST: gi|298173746|gb|HO017082.1|HO017082
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTG
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTG
EST: gi|5677567|gb|AI938697.1|AI938697
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|7691355|gb|AW759413.1|AW759413
EST:     AGAATTTGGCGTCGCTCTTCGGGCANGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATANGGCCACTGNACCG-AGTCGTGGGTTTGGATTTGTTAC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTG-ACCGGAGTCGTGGGTTTGGATTTGTTAC
EST: gi|17519638|gb|BM188680.1|BM188680
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|192322729|gb|FK014420.1|FK014420
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTTGGATTTGTTAC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTT-GGATTTGTTAC
EST: gi|209700138|gb|BW652982.1|BW652982
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|213618245|gb|DB973015.1|DB973015
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|213617684|gb|DB959352.1|DB959352
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|151395507|gb|EV265384.1|EV265384
EST:     GGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|31471739|gb|CD413767.1|CD413767
EST:     GTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGCCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: GTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|15815453|gb|BI787728.1|BI787728
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|193539009|gb|FK496411.1|FK496411
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACC
EST: gi|14126680|gb|BG791118.1|BG791118
EST:     AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAG                         GTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTT
genomic: AGAATTTGGCGTCGCTCTTCGGGCAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtgcgt ... gttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgtttgaggtttcgatctttggttttaaataatgtgggctgttgtttcagGTTATTTATAATAGGGCCACTGACCGGAGTCGTGGGTTTGGATTTGTTACCATGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTT
                                              ttgtttc  CT-rich tract
                      tttggttttaaataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG