1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atattccgaggtggtggtgagagcataggttgagttaatgacagtgggatgaagttttattttttaactatgagtggtacatgaatgaatggctgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTA
species | Glycine max |
transcript | GLYMA05G02740.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|151394814|gb|EV264685.1|EV264685
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAGgtaacttttt ... ggctgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|193679351|gb|FK619757.1|FK619757
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAGgtaacttttt ... ggctgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTEST: gi|208271891|gb|GE069163.1|GE069163
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAGgtaacttttt ... ggctgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: AGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: AGCGAGATTGGGCTGGGACATCCCTGAAGTTCCCAAGgtaacttttt ... ggctgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
gggatgaagttttattttttaactatgagtggtacatgaatgaatggctgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTA
ttttaac putative branch site (score: 2)
aagttttattttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattccgaggtggtggtgagagcataggttgagttaatgacagtgggatgaagttttattttttaactatgagtggtacatgaatgaatggctgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTA
- - - - - -tggtggt
- - - - - - - - - - - - - -ggttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat