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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatgtttgttgattttattattattctcatgcttctgtttgcaattcgttgaacgaaaaccaactcgtttttattgttttcttctgatagTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGCGGTTTCCTACGGCGTCCCTGGACCCAACGGGTTCCGATCCGCACCCGTT

Basic information

species Glycine max
transcript GLYMA05G02590.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259243|gb|BG882151.1|BG882151
EST:     CCCTACGACAGCAGATATTCTGACGCCTCTTCTTTTCGCGGCCGTCGTAG                         TGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGC
genomic: CCCTACGACAGCAGATATTCTGACGCCTCTTCTTTTCGCGGCCGTCGTAGgtacgtatgt ... cttctgatagTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgcaattcgttgaacgaaaaccaactcgtttttattgttttcttctgatagTGATTTCGTTGGACCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCGCGGTTTCCTACGGCGTCCCTGGACCCAACGGGTTCCGATCCGCACCCGTT
                            ctcgtttttattgttt  CT-rich tract
                                tttttattgttttctt  TA-rich tract