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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttttttttttttctttttccctcttccttctctctcaaatcacacattctccaaaatgtgcttcctttttctctttcttctcaactgatatgttatgttatctatttttgtttctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT

Basic information

species Glycine max
transcript GLYMA05G01160.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01160.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g05990.t01 (Vitis vinifera), 3'ss of exon 1
gtatgttttttttttttttctttttccctcttccttctctctcaaatcacacattctccaaaatgtgcttcctttttctctttcttctcaactgatatgttatgttatct-atttttgtttcta--ttgcagGCCTGTCATTAGTCTTGTTTATCCTCT
                                     |     ||||    ||||     |||  |  | | |       |||  | |  |   | |       | || | |||| ||| | |   ||||||||||||| ||||||||| |||||||||
--------------------------------ttccattgaataaatggagcattaagggaaagattttccatggaaaaattttctatagaaacaaacagaggctaatttgatttctgtgtttgatttgcagGCCTGTCGTTAGTCTTGCTTATCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191954|gb|HO036036.1|HO036036
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|5688137|gb|AI941152.1|AI941152
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|298190627|gb|HO032748.1|HO032748
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|298190018|gb|HO032139.1|HO032139
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|5688154|gb|AI941169.1|AI941169
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|298191586|gb|HO039065.1|HO039065
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|192294352|gb|FG987281.1|FG987281
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|298189313|gb|HO037716.1|HO037716
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|298171165|gb|HO016197.1|HO016197
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|19936423|gb|BQ080857.1|BQ080857
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|208334075|gb|GE132454.1|GE132454
EST:     GGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|16346714|gb|BI972309.1|BI972309
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|298183222|gb|HO028207.1|HO028207
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|298196167|gb|HO044558.1|HO044558
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|7285106|gb|AW597593.1|AW597593
EST:     GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTGCTTCTCAAAAACTTCGATGTGCTTGCTGGgtatgttttt ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctctttcttctcaactgatatgttatgttatctatttttgtttctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
               aactgat  putative branch site (score: 3)
                                 tctatttttgtttct  putative PPT
                    atatgttatgttatct  TA-rich tract