Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtcctctctaaccctcgcatttcattgcgcttttccgtttcccgctccagatctgtaactaattgcaccgttttttcatgtacagGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGATATGCGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATT

Basic information

species Glycine max
transcript GLYMA05G00370.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348389|gb|BI973984.1|BI973984
EST:     GACATCGTCGTTCAAGTCCTCGATCTTAAGGCGACAGGCAATAAATACAT                         GTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGA
genomic: GACATCGTCGTTCAAGTCCTCGATCTTAAGGCGACAGGCAATAAATACATgttcgtcctc ... tcatgtacagGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGA
EST: gi|209698296|gb|BW667574.1|BW667574
EST:     GACATCGTCGTTCAAGTCCTCGATCTTAAGGCGACAGGCAATAAATACAT                         GTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGA
genomic: GACATCGTCGTTCAAGTCCTCGATCTTAAGGCGACAGGCAATAAATACATgttcgtcctc ... tcatgtacagGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccgtttcccgctccagatctgtaactaattgcaccgttttttcatgtacagGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGATATGCGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATT
                          aactaat  putative branch site (score: 2)
                                     ccgttttttc  putative PPT
                         taactaatt  TA-rich tract