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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcctcctacaacattcaattttgcttttcactttttataaatgatgttggttggttggttttggtttcccagCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGCGTTCGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGC

Basic information

species Glycine max
transcript GLYMA04G43390.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041373|gb|BM309667.1|BM309667
EST:     TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAG                         CTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
genomic: TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGgtaattttcc ... ggtttcccagCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
EST: gi|254326214|gb|GR840806.1|GR840806
EST:     TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAG                         CTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
genomic: TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGgtaattttcc ... ggtttcccagCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
EST: gi|27426815|gb|CA938335.1|CA938335
EST:     TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAG                         CTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
genomic: TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGgtaattttcc ... ggtttcccagCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
EST: gi|298187350|gb|HO034499.1|HO034499
EST:     TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTCCAG                         CTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
genomic: TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGgtaattttcc ... ggtttcccagCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
EST: gi|120533661|gb|EH261794.1|EH261794
EST:     TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAG                         CTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC
genomic: TGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCAATTCTTCAGgtaattttcc ... ggtttcccagCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgcttttcactttttataaatgatgttggttggttggttttggtttcccagCTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGCGTTCGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGC
                                               tttccc  CT-rich tract
       ttttcactttttataa  TA-rich tract