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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctctctctcctctatatcttaacttcttcaactattgtgtttttttttttttgagctgtgaagttggaaacttgggtttatgggttttgattttgagagaatttaaaacattgtggtccgatcctgggaattttcttttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCGGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG

Basic information

species Glycine max
transcript GLYMA04G43340.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054062|gb|BM732729.1|BM732729
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|213619802|gb|DB967424.1|DB967424
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|213615386|gb|DB965651.1|DB965651
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|151395197|gb|EV265068.1|EV265068
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|31561426|gb|CD487264.1|CD487264
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|209720190|gb|BW674528.1|BW674528
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|16104724|gb|BI892464.1|BI892464
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAGCGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|17023237|gb|BM094271.1|BM094271
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|8283506|gb|BE021065.1|BE021065
EST:     CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CCAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
EST: gi|192305500|gb|FG994294.1|FG994294
EST:     CAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAG                         GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG
genomic: CAATTTTCTCTGTCTTTTCCTTCATTATTGGTATGCTCGTCACAAGCAGgtctctctct ... ttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagagaatttaaaacattgtggtccgatcctgggaattttcttttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCGGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG
                                      ttttctttt  CT-rich tract
     agaatttaaaacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctctctctctcctctatatcttaacttcttcaactattgtgtttttttttttttgagctgtgaagttggaaacttgggtttatgggttttgattttgagagaatttaaaacattgtggtccgatcctgggaattttcttttgggtgcagGATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCGGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG