1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaagctgatctaatgtggggcaaacaattagttttaacatacaactgcgttaaatatcatattttcagtctactctttattgatgtagtttgtcatgcagATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATTGGATGACGCCAGAAAAG
species | Glycine max |
transcript | GLYMA04G42740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAG ATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATEST: gi|213613770|gb|DB961267.1|DB961267
genomic: CTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAGgtactaatta ... tgtcatgcagATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAT
EST: CTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAG ATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATEST: gi|192308516|gb|FK002412.1|FK002412
genomic: CTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAGgtactaatta ... tgtcatgcagATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAT
EST: CTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAG ATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAT
genomic: CTCTTTGTTCCGACCTAGCCAAGCCTCCGCTCGAAACCGTCGTCTACGAGgtactaatta ... tgtcatgcagATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAT
tgcgttaaatatcatattttcagtctactctttattgatgtagtttgtcatgcagATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATTGGATGACGCCAGAAAAG
tattgat putative branch site (score: 3)
taaatatcatattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagctgatctaatgtggggcaaacaattagttttaacatacaactgcgttaaatatcatattttcagtctactctttattgatgtagtttgtcatgcagATTGGTATGTTTCAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACATTGGATGACGCCAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
gaagctg
- - - - - - atgtggg
- - - - - - - - - -gcaaaca
- - - - - - - - - - - - - - - - - - - - -caactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta