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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctcgtggcttgatttgcattgctgctaactaactacgcttggcttagcaatggtttgattggtttggtttcgtttgtttgattttgtgtcagCCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCGGCTTTTCAGGAAACGAGCATTTCGCCGGCGAATTTCGTGTATCCGCTTT

Basic information

species Glycine max
transcript GLYMA04G42670.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813460|gb|BQ297938.1|BQ297938
EST:     TGCCGCCCAGACCGGCGGCTCCGGTTGGAACACCGGTGGTTCCTTCACTT                         CCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCG
genomic: TGCCGCCCAGACCGGCGGCTCCGGTTGGAACACCGGTGGTTCCTTCACTTgtgagtttct ... tttgtgtcagCCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCG
EST: gi|10234634|gb|BE803522.1|BE803522
EST:     TGCCGCCCAGACCGGCGGCTCCGGTTGGAACACCGGTGGTTCCTTCACTT                         CCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCG
genomic: TGCCGCCCAGACCGGCGGCTCCGGTTGGAACACCGGTGGTTCCTTCACTTgtgagtttct ... tttgtgtcagCCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggcttagcaatggtttgattggtttggtttcgtttgtttgattttgtgtcagCCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCGGCTTTTCAGGAAACGAGCATTTCGCCGGCGAATTTCGTGTATCCGCTTT
                                      gtttgat  putative branch site (score: 5)
                                       tttgatttt  TA-rich tract