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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttaagatccttttggttttacatgagtttctttcgttttttatcaccctgatgaaagtttaagttttttttttctctatacttggcttctgaacttgtggttcctctgtttctcattgttcctctttattggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT

Basic information

species Glycine max
transcript GLYMA04G42040.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42040.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 3'ss of exon 1
gttggtttaagatccttttggttttacatgagtttctttc-gttttttatcaccctgatgaaagtttaagttttttttttctctatacttggcttctgaacttgtggttcctctgtttctcattgttcctc---tttattggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
                 | ||| ||   | | || | |   | |  | |||| | |  |    |||||  |||||||||| |  |  ||||  ||||     ||   || ||  |||| |  ||| || |    ||  |||  ||||| |||||| ||||||||||||| |||||||||||| |
----------------gtgggtatttttttatttccatcaagatagtcatcagctttgttcttgtttagatttttttttttt--acccttgttttct--ttctgccttttcttggtttgtttttgatctttgaattatttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193315444|gb|FK278486.1|FK278486
EST:     CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTG                         GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
genomic: CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTGgttggtttaa ... attggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
EST: gi|193337832|gb|FK302129.1|FK302129
EST:     CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTG                         GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
genomic: CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTGgttggtttaa ... attggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
EST: gi|298193962|gb|HO040610.1|HO040610
EST:     CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTG                         GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
genomic: CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTGgttggtttaa ... attggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
EST: gi|192305144|gb|FG994694.1|FG994694
EST:     CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTG                         GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
genomic: CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTGgttggtttaa ... attggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
EST: gi|193616174|gb|FK571936.1|FK571936
EST:     CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTG                         GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
genomic: CACAAGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGCATCTTTGgttggtttaa ... attggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcttctgaacttgtggttcctctgtttctcattgttcctctttattggtacagGGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT
                  ttcctctgtttctcat  CT-rich tract
                                        tctttatt  TA-rich tract