1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcgacaaatgttagtttgttggagtgtcagttttgttaatagagaggatcaagatctttaatgaaagtgacataatgtaggcaagtatttgatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCTGAAGAATGGGA
species | Glycine max |
transcript | GLYMA04G42010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|151399188|gb|EV269059.1|EV269059
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|151399188|gb|EV269059.1|EV269059
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|151399188|gb|EV269059.1|EV269059
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|24205729|gb|BU964982.1|BU964982
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|24205729|gb|BU964982.1|BU964982
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|24205729|gb|BU964982.1|BU964982
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|24205729|gb|BU964982.1|BU964982
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG AEST: gi|10231586|gb|BE800474.1|BE800474
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacag-
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG GTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGEST: gi|209716366|gb|BW657486.1|BW657486
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAG
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG GTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGEST: gi|151397074|gb|EV266947.1|EV266947
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTG
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG GTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGEST: gi|151402608|gb|EV272421.1|EV272421
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTG
EST: AGGCCTTCTAGCAGGGAGAATTCCCGGCCTGTCCGAGCCAGGTGAACAAG GTTGGAGGACCTATCGCAGGCAGGATGAGAAGTCAGGAGGACATGGTGTTGEST: gi|5510308|gb|AI856750.1|AI856750
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTG
EST: AGGCCTCCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG GTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGEST: gi|213594235|gb|DB966136.1|DB966136
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTG
EST: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAG GTTGGAGGACCTATCGCAGGCCGGATGAGAA-TCAGGAGGACATGGTGTTG
genomic: AGGCCTTCTAGCAGGGAGAATTCCTGGCCTGTCCGAGCCAGATGAACAAGgttcgttcat ... gatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTG
ggatcaagatctttaatgaaagtgacataatgtaggcaagtatttgatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCTGAAGAATGGGA
tttaatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgacaaatgttagtttgttggagtgtcagttttgttaatagagaggatcaagatctttaatgaaagtgacataatgtaggcaagtatttgatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCTGAAGAATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - -tggagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagta