1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatatatgtgctgcatcatgcacactctatatttcgtggtatcattataattttaatttttcaatatttatctttagatttacatgtcagtttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG
species | Glycine max |
transcript | GLYMA04G41130.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|151395221|gb|EV265092.1|EV265092
genomic: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: ACAGAATCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|298176588|gb|HO023175.1|HO023175
genomic: ACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AAAACTGAACGCTATAGAAAATGTTCAAAAA ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|298176132|gb|HO015537.1|HO015537
genomic: AAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|298173235|gb|HO020219.1|HO020219
genomic: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAA ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|151413172|gb|EV282980.1|EV282980
genomic: ACAAACACAGATTCACTCCAAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AAAACTGAACGCTATAGAAAATGTTCAAAAA ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAEST: gi|7795432|gb|AW780757.1|AW780757
genomic: AAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
EST: AAAACTGAACGCTATAGAAAATGTTCAAAAA ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
genomic: AAAACTGAACGCTATAGAAAATGTTCAAAAAgtacgctcac ... tttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCA
tataattttaatttttcaatatttatctttagatttacatgtcagtttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG
ttttaat putative branch site (score: 3)
tttcttcc putative PPT
ttttaatttttcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatatgtgctgcatcatgcacactctatatttcgtggtatcattataattttaatttttcaatatttatctttagatttacatgtcagtttcttccagATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - -gtgctgc
- - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtc