1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgatatcataattgggctttaccctttgatgtgaataacaactttcgttattgtttactgattggttttttgttgcctgtgacactaacctcacccattaactccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTCTAATAGTTGCTAAATG
species | Glycine max |
transcript | GLYMA04G41130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|5126428|gb|AI748164.1|AI748164
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|151410220|gb|EV280035.1|EV280035
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|151413172|gb|EV282980.1|EV282980
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|7795432|gb|AW780757.1|AW780757
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|24205516|gb|BU964769.1|BU964769
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|10847978|gb|BF070551.1|BF070551
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: GAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|298176588|gb|HO023175.1|HO023175
genomic: GAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTEST: gi|151395221|gb|EV265092.1|EV265092
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
EST: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAG TATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
genomic: AAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcat ... tccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCT
ctgattggttttttgttgcctgtgacactaacctcacccattaactccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTCTAATAGTTGCTAAATG
ctccact CT-rich tract
ttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatatcataattgggctttaccctttgatgtgaataacaactttcgttattgtttactgattggttttttgttgcctgtgacactaacctcacccattaactccactgcagTATCCGGGTCTTGAACCTGTGTTGGATGATATACTTCCCAAGAAGTCCCCTCTAATAGTTGCTAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT