1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacacccacttctctattctttaggcacttggtctttcacttcttggtatttttttactccattcacttcaatatctgtttgtacttttgttttgtagGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTG
species | Glycine max |
transcript | GLYMA04G40770.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTGTCATCACTGGACAAA-TCACTGGAAGATCAAAAGGATATGGCTTT GTGACCTTCAGGGGACC-AAATTCTGCAATAAGAGCTTGTCATAATCCCTAEST: gi|151397932|gb|EV267805.1|EV267805
genomic: CGTTGTCATCACTG-ACAAAATCACTGGAAGATCAAAAGGATATGGCTTTgtaacaccca ... tgttttgtagGTGACCTTCAGGG-ACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTA
EST: CCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTT GTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATEST: gi|9819333|gb|BE554846.1|BE554846
genomic: CCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTgtaacaccca ... tgttttgtagGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTAT
EST: CCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTT GTGACCTTCANGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTAT
genomic: CCGTTGTCATCACTGACAAAATCACTGGAAGATCAAAAGGATATGGCTTTgtaacaccca ... tgttttgtagGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTAT
ttggtatttttttactccattcacttcaatatctgtttgtacttttgttttgtagGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTG
cttttgtttt CT-rich tract
atttttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacccacttctctattctttaggcacttggtctttcacttcttggtatttttttactccattcacttcaatatctgtttgtacttttgttttgtagGTGACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATCGATGGGAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC