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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaccctctctctctctcaaacacaccaatctctctctctctctctctctctctctttttcacttctggggttttaaggttgttttgtttttgtgtctcaatctccagGATCAGTTTGATCTTATGTAAATGAAGTATTTTTAGACAAAACCCAG

Basic information

species Glycine max
transcript GLYMA04G40750.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193525709|gb|FK481116.1|FK481116
EST:     AAACGGACGATCCGAAGAATATTACCCTCTCTCTATAACATTATTCATCA                         GATCAGTTTGATCTTATGTAAATGAAGGATTTTTAGACAAAACCCAGATTC
genomic: AAACGGACGATCCGAAGAATATTACCCTCTCTCTATAACATTATTCATCAgtaagcaaac ... caatctccagGATCAGTTTGATCTTATGTAAATGAAGTATTTTTAGACAAAACCCAGATTC
EST: gi|193616692|gb|FK568282.1|FK568282
EST:     AAACGGACGATCCGAAGAATATTACCCTCTCTCTATAACATTATTCATCA                         GATCAGTTTGATCTTATGTAAATGAAGGATTTTTAGACAAAACCCAG
genomic: AAACGGACGATCCGAAGAATATTACCCTCTCTCTATAACATTATTCATCAgtaagcaaac ... caatctccagGATCAGTTTGATCTTATGTAAATGAAGTATTTTTAGACAAAACCCAG
EST: gi|193725374|gb|FK661460.1|FK661460
EST:     AACGGACGATCCGAAGAATATTACCCTCTCTCTATAACATTATTACATCA                         GATCAGTTTGATCTTATGTAAATGAAGGATTTTTAGACAAAACCCAG
genomic: AACGGACGATCCGAAGAATATTACCCTCTCTCTATAACATTATT-CATCAgtaagcaaac ... caatctccagGATCAGTTTGATCTTATGTAAATGAAGTATTTTTAGACAAAACCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttcacttctggggttttaaggttgttttgtttttgtgtctcaatctccagGATCAGTTTGATCTTATGTAAATGAAGTATTTTTAGACAAAACCCAG
                                                tctcc  CT-rich tract
                             ttttgttttt  TA-rich tract