1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tagagtaatgatgatgataattagacattttagatttaggcatggcttaaaaaagtgagagaaatcttctttactgacaagcttccaattttgtttgtagACAAACTGTATAACTCCTATCAAACATGAGCGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGAT
species | Glycine max |
transcript | GLYMA04G40740.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCGAGAAGCGTCGATTGGGTCCTTAAGCTGTTCCTTCTCTGTTTCTG ACAAACTGTATAACTCCTATCAAACATGAGCGGTCGCTTTTCTCGCACGATEST: gi|192301101|gb|FG990141.1|FG990141
genomic: GCTTCGAGAAGCGTCGATTGGGTCCTTAAGCTGTTCCTTCTCTGTTTCTGgtatgacatt ... ttgtttgtagACAAACTGTATAACTCCTATCAAACATGAGCGGTCGCTTTTCTCGCACAAT
EST: GCTTCGAGAAGCGTCGATTGGGTCCTTAAGCTGTTCCTTCTCTGTTTCTG ACAAACTGTATAACTCCTATCAAACATGAGCGGTCGCTTTTCTCGCACAAT
genomic: GCTTCGAGAAGCGTCGATTGGGTCCTTAAGCTGTTCCTTCTCTGTTTCTGgtatgacatt ... ttgtttgtagACAAACTGTATAACTCCTATCAAACATGAGCGGTCGCTTTTCTCGCACAAT
cttaaaaaagtgagagaaatcttctttactgacaagcttccaattttgtttgtagACAAACTGTATAACTCCTATCAAACATGAGCGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGAT
tactgac putative branch site (score: 1)
ttttgttt putative PPT
aattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagtaatgatgatgataattagacattttagatttaggcatggcttaaaaaagtgagagaaatcttctttactgacaagcttccaattttgtttgtagACAAACTGTATAACTCCTATCAAACATGAGCGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - -gatgatg
- - - - - - - - - - - - - - - - - - - -gcatggc
- - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcca