Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtccactttctcaatctaaccctttatttttcattctttatcaatcgatcgtagatctcaatttctgtgttcctttttttgtttttttgttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCTTACTGGCCCAGCCTCTTCGCCAAGCTCGCCCAGAATAAGAACATCGAAG

Basic information

species Glycine max
transcript GLYMA04G40720.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332817|gb|GR850067.1|GR850067
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4397367|gb|AI496364.1|AI496364
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|15288118|gb|BI472009.1|BI472009
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4396675|gb|AI495672.1|AI495672
EST:     GCCACTTTAATTCTCCACGACGAGGAAATCCAAGTCACC                         GCTGAGAAGATC-ACGCTCNTGTTGAAGGCTTCTAATGTCTCCGCCGAGTC
genomic: GCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTC-TGTTGAAGGCTTCTAATGTCTCCGCCGAGTC
EST: gi|31457390|gb|CD399418.1|CD399418
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|10252360|gb|BE820126.1|BE820126
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4305103|gb|AI443714.1|AI443714
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254316260|gb|GR827797.1|GR827797
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4285313|gb|AI440890.1|AI440890
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|13481400|gb|BG510743.1|BG510743
EST:     AATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: AATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31306072|gb|CD391275.1|CD391275
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|209725158|gb|BW659828.1|BW659828
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254345434|gb|GR855891.1|GR855891
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|23726825|gb|BU761415.1|BU761415
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|5677148|gb|AI938278.1|AI938278
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|6726555|gb|AW310909.1|AW310909
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|18039246|gb|BM307540.1|BM307540
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|18041450|gb|BM309744.1|BM309744
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|20811626|gb|BQ296104.1|BQ296104
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|213598020|gb|DB972208.1|DB972208
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|12689930|gb|BG156266.1|BG156266
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4405705|gb|AI507854.1|AI507854
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254340852|gb|GR854580.1|GR854580
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|15203796|gb|BI426564.1|BI426564
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254332818|gb|GR850068.1|GR850068
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|15287754|gb|BI471645.1|BI471645
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31472150|gb|CD414178.1|CD414178
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|13790203|gb|BG652794.1|BG652794
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|5753548|gb|AI960835.1|AI960835
EST:     GCTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|18848583|gb|BM567745.1|BM567745
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|213617199|gb|DB963762.1|DB963762
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|21676068|gb|BQ628419.1|BQ628419
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254316030|gb|GR825839.1|GR825839
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|19269912|gb|BM886168.1|BM886168
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|14258555|gb|BG881463.1|BG881463
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254325296|gb|GR838177.1|GR838177
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31464572|gb|CD406600.1|CD406600
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|17153521|gb|BM143454.1|BM143454
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31308931|gb|CD394134.1|CD394134
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254340853|gb|GR854581.1|GR854581
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|18848913|gb|BM568023.1|BM568023
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|17963521|gb|BM270269.1|BM270269
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4396845|gb|AI495842.1|AI495842
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|209711859|gb|BW674123.1|BW674123
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4290975|gb|AI441695.1|AI441695
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4307067|gb|AI443994.1|AI443994
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31458833|gb|CD400861.1|CD400861
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|17020806|gb|BM091840.1|BM091840
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31464358|gb|CD406386.1|CD406386
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31463038|gb|CD405066.1|CD405066
EST:     GTTGCATCTTAGCCACTTTAATTCTCCGCGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31561203|gb|CD487041.1|CD487041
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31461345|gb|CD403373.1|CD403373
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|12689284|gb|BG155620.1|BG155620
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAACATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4313594|gb|AI460713.1|AI460713
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|58020806|gb|CX707548.1|CX707548
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|6846953|gb|AW349243.1|AW349243
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|12691459|gb|BG157795.1|BG157795
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31460955|gb|CD402983.1|CD402983
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|26059623|gb|CA802537.1|CA802537
EST:     AAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: AAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|19346761|gb|BM891641.1|BM891641
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|20448691|gb|BQ252815.1|BQ252815
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|213588729|gb|DB957709.1|DB957709
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|254342031|gb|GR853168.1|GR853168
EST:     GTTGCATCTTATCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGATAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4395783|gb|AI494780.1|AI494780
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTC
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAA-GATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTC
EST: gi|5606129|gb|AI900227.1|AI900227
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|24135508|gb|BU926018.1|BU926018
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|7638919|gb|AW733184.1|AW733184
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|19348771|gb|BM893303.1|BM893303
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4288910|gb|AI441400.1|AI441400
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31475354|gb|CD417382.1|CD417382
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|8402081|gb|BE057715.1|BE057715
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|120533184|gb|EH261317.1|EH261317
EST:     CATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: CATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|19270828|gb|BM887084.1|BM887084
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|4290468|gb|AI438078.1|AI438078
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|213591722|gb|DB969822.1|DB969822
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|13790110|gb|BG652701.1|BG652701
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|31307579|gb|CD392782.1|CD392782
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|33388631|gb|CA851838.1|CA851838
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|20448452|gb|BQ252576.1|BQ252576
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|58015552|gb|CX702294.1|CX702294
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
EST: gi|13562422|gb|BG550642.1|BG550642
EST:     GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACC                         GGTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT
genomic: GTTGCATCTTAGCCACTTTAATTCTCCACGACGAGGAAATCCCAGTCACCgttagtccac ... gttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgatcgtagatctcaatttctgtgttcctttttttgtttttttgttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCTTACTGGCCCAGCCTCTTCGCCAAGCTCGCCCAGAATAAGAACATCGAAG
                  tttctgtgttcctttt  CT-rich tract
                              tttttttgtttttttg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtccactttctcaatctaaccctttatttttcattctttatcaatcgatcgtagatctcaatttctgtgttcctttttttgtttttttgttttttcagGCTGAGAAGATCAACGCTCTGTTGAAGGCTTCTAATGTCTCCGCCGAGTCTTACTGGCCCAGCCTCTTCGCCAAGCTCGCCCAGAATAAGAACATCGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC