1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacttaaatatatgttagtgattgttgttggagtttctttagtttatcttttttttttcaaatagttattttttttttggggggggttgtgtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACCGAAAGTATCCAAATGGGCATCGATTGAACAGAGCGACGAATAA
species | Glycine max |
transcript | GLYMA04G40450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCACEST: gi|207688310|gb|GD670717.1|GD670717
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGEST: gi|207694788|gb|GD677963.1|GD677963
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGG
EST: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCACEST: gi|207689359|gb|GD670870.1|GD670870
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGEST: gi|213611720|gb|DB960648.1|DB960648
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGG
EST: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTC-ACEST: gi|14990103|gb|BI315776.1|BI315776
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCACEST: gi|192310103|gb|FK001885.1|FK001885
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
EST: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCG GTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
genomic: GGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGgtattttttt ... gtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCAC
atcttttttttttcaaatagttattttttttttggggggggttgtgtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACCGAAAGTATCCAAATGGGCATCGATTGAACAGAGCGACGAATAA
ttttttttcaaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttaaatatatgttagtgattgttgttggagtttctttagtttatcttttttttttcaaatagttattttttttttggggggggttgtgtatttgtagGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACCGAAAGTATCCAAATGGGCATCGATTGAACAGAGCGACGAATAA
- - - - - - -gttagtg
- - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg