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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttactctcttcatctctatttcttttaattaatttatttattttcttaatcttttgctactaggaaataaattgtggtattaggtttagtgattgatttgcttattacgtgtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAAGTTAAAGATGAATTGATTTTGGATGGGAACGACATTGAACTTGTTTCTA

Basic information

species Glycine max
transcript GLYMA04G40430.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182885|gb|HO031620.1|HO031620
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193383123|gb|FK348182.1|FK348182
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAA-GAAG                         GTGAGAAA-GTGGACCTTACTTAACGGTGTTTCCGTTGTTC
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTT-CTTAACGGTGTTTCCGTTGTTC
EST: gi|193421860|gb|FK386281.1|FK386281
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAA-GAAG                         GTGAGAAA-GTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298165484|gb|HO011533.1|HO011533
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|209727510|gb|BW663746.1|BW663746
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298168318|gb|HO014493.1|HO014493
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|193475028|gb|FK441669.1|FK441669
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTT
EST: gi|298178032|gb|HO023881.1|HO023881
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298196811|gb|HO041554.1|HO041554
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298171212|gb|HO016244.1|HO016244
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGACGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298190805|gb|HO032926.1|HO032926
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|9440319|gb|BE440826.1|BE440826
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|15337517|gb|BI498173.1|BI498173
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCT-GGCGAAAAGAAG                         -TGAGAAAAGTG-ACCTTCTTAACGG
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGG
EST: gi|4397583|gb|AI496580.1|AI496580
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGNGTNTTCCGTTGT-CGATCTGAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGT-TTCCGTTGTTCGATCTGAAAA
EST: gi|31473816|gb|CD415844.1|CD415844
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTNAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|18733868|gb|BM527858.1|BM527858
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|208221896|gb|GE017702.1|GE017702
EST:     GCAACGACAACAAGTCTGTTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
EST: gi|298199575|gb|HO043452.1|HO043452
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298182497|gb|HO031232.1|HO031232
EST:     GCAACGACAGCAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|207760910|gb|GD734961.1|GD734961
EST:     GCAACGACAACAAGTCTGTTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTT
EST: gi|298172026|gb|HO021618.1|HO021618
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298163903|gb|HO013548.1|HO013548
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAA
EST: gi|298168666|gb|HO009596.1|HO009596
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|7042147|gb|AW472041.1|AW472041
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTT
EST: gi|193393495|gb|FK360621.1|FK360621
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGA
EST: gi|298186198|gb|HO036831.1|HO036831
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGGAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|208159216|gb|GD952151.1|GD952151
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|15286569|gb|BI470460.1|BI470460
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298163111|gb|HO011844.1|HO011844
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298177258|gb|HO023505.1|HO023505
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCCGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298180964|gb|HO022403.1|HO022403
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298163640|gb|HO012373.1|HO012373
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATCTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298178502|gb|HO024237.1|HO024237
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|14991434|gb|BI317107.1|BI317107
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298167479|gb|HO012742.1|HO012742
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298173347|gb|HO016683.1|HO016683
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298166890|gb|HO010329.1|HO010329
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
EST: gi|298164385|gb|HO014030.1|HO014030
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGT
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGT
EST: gi|298195600|gb|HO043991.1|HO043991
EST:     GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAG                         GTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA
genomic: GCAACGACAACAAGTCTATTGAGATCAGAAATTTCCTTGGCGAAAAGAAGgtactttact ... gtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataaattgtggtattaggtttagtgattgatttgcttattacgtgtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAAGTTAAAGATGAATTGATTTTGGATGGGAACGACATTGAACTTGTTTCTA
                         gattgat  putative branch site (score: 4)
                          attgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactttactctcttcatctctatttcttttaattaatttatttattttcttaatcttttgctactaggaaataaattgtggtattaggtttagtgattgatttgcttattacgtgtatcattagGTGAGAAAAGTGGACCTTCTTAACGGTGTTTCCGTTGTTCGATCTGAAAAAGTTAAAGATGAATTGATTTTGGATGGGAACGACATTGAACTTGTTTCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG