1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgttatctttatgtgtaacttttaatgttcatcactataaaaagtcatgtaactttataatcttgatcatacattttactcaatgttaccgcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGGTAGCTCCACCACAGGCAAATGAGGTTCGTATCAAGATCTTGTTCACCTC
species | Glycine max |
transcript | GLYMA04G39190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAG CTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGGEST: gi|209704354|gb|BW678318.1|BW678318
genomic: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAGgtattttatt ... gcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGG
EST: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAG CTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGGEST: gi|213597606|gb|DB964455.1|DB964455
genomic: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAGgtattttatt ... gcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGG
EST: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAG CTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGGEST: gi|209725690|gb|BW663181.1|BW663181
genomic: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAGgtattttatt ... gcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGG
EST: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAG CTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGGEST: gi|213588311|gb|DB967797.1|DB967797
genomic: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAGgtattttatt ... gcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGG
EST: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAG CTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGG
genomic: CAAAGTATAAATGGCTTCAACCACTGCTGGAAAGGTCATACGCTGCAAAGgtattttatt ... gcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGG
catgtaactttataatcttgatcatacattttactcaatgttaccgcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGGTAGCTCCACCACAGGCAAATGAGGTTCGTATCAAGATCTTGTTCACCTC
aactttataatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatctttatgtgtaacttttaatgttcatcactataaaaagtcatgtaactttataatcttgatcatacattttactcaatgttaccgcatttgcagCTGCGGTAGCATGGGAAGCTGGAAAGCCATTGGTGATAGAAGAAGTTGAGGTAGCTCCACCACAGGCAAATGAGGTTCGTATCAAGATCTTGTTCACCTC
- - - - -tatgtgt
- - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttacc