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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatttctctctctaacggttttttttttcttactctcaataatctgaatcattactatttttttgttgttattacagAGGGAACGGCGTCGCTGTTATCTCTTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAG

Basic information

species Glycine max
transcript GLYMA04G38770.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38770.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G032337_T01 (Zea mays), 3'ss of exon 1
------gttcatttctctctctaacggttttttt-------------tttcttactctcaataatctgaatcattactatttttttgttgttatt-acagAGGGAACGGCGTCGCTG--TTATCTC-------TTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAG
      |||   ||| |  | | |||  | |  |             |  || ||||||  ||   |   |||   || | |||   | |   || ||||        | |   |||  | | | |         | | |  |  |||  ||||| |||||||||||||| |||||||||||||| || |||
aaccccgtttggttccccatttgacgaatctgatgagatgaaattaatccctcactctctttaccttttttcacctctctctttcgctcgccgtttacagGTTTGCTCGTGAGACTGGATGAGCGCAGCAGGGCCGCGGACTCGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcttactctcaataatctgaatcattactatttttttgttgttattacagAGGGAACGGCGTCGCTGTTATCTCTTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAG
    ttcttac  putative branch site (score: 2)
                        aatcattactattttt  TA-rich tract