1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatcaagattgtaattttggcttattttgcttcaattcaatttgacagtgaaatagtcatatgttctgaaattttggcctttgtttttttctgttgcagGGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAG
species | Glycine max |
transcript | GLYMA04G38320.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTCCTCGTCATCTCTATCTTTATGTCCGTATTCACAG GGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGACEST: gi|209717469|gb|BW653937.1|BW653937
genomic: CTTCTTCCTCGTCATCTCTATCTTTATGTCCGTATTCACAGgtgggtgcta ... tctgttgcagGGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGAC
EST: CTTCCTTGGCTTCTTCCTCGTCATCTCTATCTTTATGTCCGTATTCACAG GGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGACEST: gi|208172018|gb|GD968439.1|GD968439
genomic: CTTCCTTGGCTTCTTCCTCGTCATCTCTATCTTTATGTCCGTATTCACAGgtgggtgcta ... tctgttgcagGGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGAC
EST: CTTCCTTGGCTTCTTCCTCGTCATCTCTATCTTTATGTCCGTATTCACAG GGTNTTCATGACATGCTGTTAAGATTTCGATTGCTATTG-AACATGATGAC
genomic: CTTCCTTGGCTTCTTCCTCGTCATCTCTATCTTTATGTCCGTATTCACAGgtgggtgcta ... tctgttgcagGGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGAC
acagtgaaatagtcatatgttctgaaattttggcctttgtttttttctgttgcagGGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAG
atttgac putative branch site (score: 4)
ttttggcctttgtttt putative PPT
tttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcaagattgtaattttggcttattttgcttcaattcaatttgacagtgaaatagtcatatgttctgaaattttggcctttgtttttttctgttgcagGGTGTTCATGACATGCTGTTAAGATTTCGATTGCTATTGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG