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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacctttattcttttattctggcggatgctatcttagaattttcatgaaacatttcataccactaataatggcatgtaaatggactattttgtttgttccagCAATATGGAAATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAG

Basic information

species Glycine max
transcript GLYMA04G37810.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 3'ss of exon 5
gtgaacct-ttattcttttattctggcggatgct-atcttagaattttcatgaaacatttcataccactaataatggcatgtaaatggactattttgtt----tgttccagCAATATGGAAATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAG
||     | |||||  ||||| |       || |   ||| | | | ||   || | | |||| | |    |  ||| |  | |||  ||   | ||||    | || |||||||||||| | ||||||||  | || || || |||||| |||| || |||||||||||||||||||||||| ||||||||||   ||||||||||| ||
gtacgtatattatttctttatcccttgaagtgtttgacttgggagtctctgcaagcttgtcat-caaagcttcttggaagttcaattaacacatatgttccattctttcagCAATATGGAGACATCCGAACACTTTACACAGCTTGCAAGCATCGCGGGTTTGTTATGATTTCTTATTATGATATAAGGGCAGCCAGAAATGCAATGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208297918|gb|GE093217.1|GE093217
EST:     GAAACATCAATAGCAATGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAG                         CAATATGGAGATATCCGAACCATATATACTGCCTGCAAGCATCGTGGATTT
genomic: GAAACATCAATAGCAATGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAGgtgaaccttt ... tttgttccagCAATATGGAAATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatttcataccactaataatggcatgtaaatggactattttgtttgttccagCAATATGGAAATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAG
             cactaat  putative branch site (score: 2)
                                        ttttgttt  putative PPT
                                      tattttgttt  TA-rich tract