Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgccatgttcttaaaatttgcaattctttctatctttaatttttctgcatttatatttatcactttgtttattctcctcttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGATATCATGAAGCTCGATACGACTAGTCTCGAATCGTTTCCCACACTGATT

Basic information

species Glycine max
transcript GLYMA04G37030.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410487|gb|EV280302.1|EV280302
EST:     GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298181405|gb|HO022844.1|HO022844
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|208057543|gb|GD852114.1|GD852114
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|6719165|gb|AW306812.1|AW306812
EST:     TTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: TTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|192325767|gb|FK017989.1|FK017989
EST:     AATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: AATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|193496052|gb|FK458170.1|FK458170
EST:     GAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: GAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298196386|gb|HO041129.1|HO041129
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298196464|gb|HO041207.1|HO041207
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCATAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTGGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|17400147|gb|BM176929.1|BM176929
EST:     GATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: GATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|9439733|gb|BE440247.1|BE440247
EST:     GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|18041174|gb|BM309468.1|BM309468
EST:     TCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: TCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|207755014|gb|GD726963.1|GD726963
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|120533672|gb|EH261805.1|EH261805
EST:     ATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: ATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|208299254|gb|GE100097.1|GE100097
EST:     TAACGTGAGATCTCAGATTGCAAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: TAACGTGAGATCTCAGATTGC-AATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|213618293|gb|DB973063.1|DB973063
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|192333182|gb|FK026511.1|FK026511
EST:     CTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298198281|gb|HO039820.1|HO039820
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTCCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTACTCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|18716094|gb|BM522869.1|BM522869
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|192299603|gb|FG987735.1|FG987735
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|17519181|gb|BM188223.1|BM188223
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|193527066|gb|FK485460.1|FK485460
EST:     GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: GTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298198546|gb|HO040085.1|HO040085
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298175351|gb|HO016010.1|HO016010
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GT-TA-----CAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|151411725|gb|EV281536.1|EV281536
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         A
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtag-
EST: gi|151411725|gb|EV281536.1|EV281536
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         A
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtag-
EST: gi|151411725|gb|EV281536.1|EV281536
EST:     CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         A
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtag-
EST: gi|6502002|gb|AW203375.1|AW203375
EST:     CAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GT-TA-----CAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298167708|gb|HO012971.1|HO012971
EST:     CTAGCGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GT-TA-----CAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: CTAACGTGAGATCTCAGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|298172907|gb|HO019891.1|HO019891
EST:     AGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: AGATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
EST: gi|14126592|gb|BG791030.1|BG791030
EST:     GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCG                         GTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA
genomic: GATTGCAATTGCCTCTTCTCTTCTCCCAGAATCGgtgcgccatg ... ttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatttttctgcatttatatttatcactttgtttattctcctcttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGATATCATGAAGCTCGATACGACTAGTCTCGAATCGTTTCCCACACTGATT
 ctttaat  putative branch site (score: 4)
                         tcactttgtttattct  putative PPT
              atttatatttatcact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgccatgttcttaaaatttgcaattctttctatctttaatttttctgcatttatatttatcactttgtttattctcctcttggatgtagGTGTAGGTTACAGGTTTAAGGGTTTTGTTTTCATTTAGGTCACTAATCCGATATCATGAAGCTCGATACGACTAGTCTCGAATCGTTTCCCACACTGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC