1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggaagaaggaaaaaacttattagtttagcctttatcttctccttaatcatgtcctctgtattttttttatgtttaaaaattattgaacacaaaatttcagAGATTTTGCTCAGTAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGGTTGCAGCGCTATGGAGTGATCACATCAAGTAAGGTGGCTGAAGTGATGG
species | Glycine max |
transcript | GLYMA04G36430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCAAAACCCTAATTTCATCACGGGGAACACTCTCTTCCTCAGGATGCAG AGATTTTGCTCAGTAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGGEST: gi|151396606|gb|EV266483.1|EV266483
genomic: TCCAAAACCCTAATTTCATCACGGGGAACACTCTCTTCCTCAGGATGCAGgtaataattt ... aaaatttcagAGATTTTGCTCAGTAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGG
EST: TCCAAAACCCTAATTTCATCACGGGGAACACTCTCTTCCTCAGGATGCAG AGATTTTGCTCAATAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGG
genomic: TCCAAAACCCTAATTTCATCACGGGGAACACTCTCTTCCTCAGGATGCAGgtaataattt ... aaaatttcagAGATTTTGCTCAGTAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGG
atcatgtcctctgtattttttttatgtttaaaaattattgaacacaaaatttcagAGATTTTGCTCAGTAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGGTTGCAGCGCTATGGAGTGATCACATCAAGTAAGGTGGCTGAAGTGATGG
ccttaat putative branch site (score: 4)
tattttttttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagaaggaaaaaacttattagtttagcctttatcttctccttaatcatgtcctctgtattttttttatgtttaaaaattattgaacacaaaatttcagAGATTTTGCTCAGTAAGTGGCTTAAGTAAGAACAAAGCACTGGTGGAGAGGTTGCAGCGCTATGGAGTGATCACATCAAGTAAGGTGGCTGAAGTGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - gaaaaaa
- - - - - - - - - - - - - -gccttta
- - - - - - - - - - - - - - - - - -cttctcc