1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aacccttgttgtttttctgtgatgatttgtgattggggcaagtgcataggttatttttcttttaactttaagtggtgcatgtatggatgactgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATCCCCCTAGTTCTCTGTTTAAGGGAGTTGCCCGAA
species | Glycine max |
transcript | GLYMA04G36360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCAAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATEST: gi|13481964|gb|BG511307.1|BG511307
genomic: CCCCAAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCCAAGgtaaacattc ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTAT
EST: CCCCAAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATEST: gi|209720934|gb|BW682413.1|BW682413
genomic: CCCCAAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCCAAGgtaaacattc ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTAT
EST: CCCCAAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCCAAG GCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTAT
genomic: CCCCAAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCCAAGgtaaacattc ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTAT
ataggttatttttcttttaactttaagtggtgcatgtatggatgactgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATCCCCCTAGTTCTCTGTTTAAGGGAGTTGCCCGAA
ttttaac putative branch site (score: 2)
ttatttttcttttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacccttgttgtttttctgtgatgatttgtgattggggcaagtgcataggttatttttcttttaactttaagtggtgcatgtatggatgactgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATCCCCCTAGTTCTCTGTTTAAGGGAGTTGCCCGAA
- cccttgt
- - - - - - - ttctgtg
- - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - -attgggg
- - - - - - - - - - - - - - - - - - - caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatga