1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acgtgaaaggaattgtaatcagtgatgctagttcgatgaggatttgaatttaagtttaacctggtgcgtttttgttttgttttctctgtgttgtttgcagGTGTTGAAGGCGTTTCATTACCCGGTAACTGTGACTGTTGTTCAGTTTGCTGTTGGGACTGTGCTCGTGGCATTTATGTGGGGTTTGAATCTCTATAAGA
species | Glycine max |
transcript | GLYMA04G35730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGCCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAG GTGTTGAAGGCGTTTCATTACCCGGTAACTGNGACTGTTGGT-AGTTTGCTEST: gi|10843801|gb|BF067056.1|BF067056
genomic: TTGGCCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAGgtccgaatac ... ttgtttgcagGTGTTGAAGGCGTTTCATTACCCGGTAACTGTGACTGTTGTTCAGTTTGCT
EST: TTGGCCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAG GTGTTGAAGGCGTTTCATTACCCGGTAACTGTGACTGTTGTTCAGTTTGCT
genomic: TTGGCCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAGgtccgaatac ... ttgtttgcagGTGTTGAAGGCGTTTCATTACCCGGTAACTGTGACTGTTGTTCAGTTTGCT
gaatttaagtttaacctggtgcgtttttgttttgttttctctgtgttgtttgcagGTGTTGAAGGCGTTTCATTACCCGGTAACTGTGACTGTTGTTCAGTTTGCTGTTGGGACTGTGCTCGTGGCATTTATGTGGGGTTTGAATCTCTATAAGA
gtttaac putative branch site (score: 3)
tttttgttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtgaaaggaattgtaatcagtgatgctagttcgatgaggatttgaatttaagtttaacctggtgcgtttttgttttgttttctctgtgttgtttgcagGTGTTGAAGGCGTTTCATTACCCGGTAACTGTGACTGTTGTTCAGTTTGCTGTTGGGACTGTGCTCGTGGCATTTATGTGGGGTTTGAATCTCTATAAGA
- - gaaaggaa
- - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - -ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctggtg