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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagataatactttgttataggtttgacctcttggctttctttagagatcatttagaccctagaatgttgtatgtctatatattgcccttatgagcttgaaatattttattataacctatcttttttctctttccttttcccctctcattttagGATGATTATTTAGATTGTTTTGGTGATACTCAAACAATTGGAAAG

Basic information

species Glycine max
transcript GLYMA04G34770.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34770.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G147721_T01 (Zea mays), 3'ss of exon 7
gtacagataatactttgttataggtttgacctcttggctttctttagagatcatttagaccctagaatgttgtatgtctatatattgcccttatgagcttgaaatattttattataacctatcttttttctctttccttttcccctctcattttagGATGATTATTTAGATTGTTTTGGTGATACTCAAACAATTGGAAAG
                                                                 |||| | | ||| | | |   | |   ||||  | ||  |  | ||||  |  ||| || |  |  || |  |||| |        |  |||||||||||||||||||||| |||||| || ||   ||||| |||
---------------------------------------------------------------gtaatgcttt-tgttt-tctgaaggctaaatgatatggatttgctgtattgga--ctacctctgattactattatttttc--------tgcagGATGATTATTTAGATTGTTTCGGTGATCCTGAATTCATTGGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattttattataacctatcttttttctctttccttttcccctctcattttagGATGATTATTTAGATTGTTTTGGTGATACTCAAACAATTGGAAAG
          ttataac  putative branch site (score: 2)
                cctatcttttttctct  CT-rich tract
     ttttattataacctat  TA-rich tract