1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgtaccccaatgactaaattaaccatatttttcatgttcagtgtgttttttctttgtgtattaactgatgatacctttggcttttgggtttctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
species | Glycine max |
transcript | GLYMA04G33880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGG GCCTTTGCTTAGTCTTGCCTATCCTCTEST: gi|298190156|gb|HO032277.1|HO032277
genomic: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGGgtatgtgttt ... tctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
EST: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGG GCCTTTGCTTAGTCTTGCCTATCCTCTEST: gi|208224477|gb|GE021844.1|GE021844
genomic: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGGgtatgtgttt ... tctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
EST: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGG GCCTTTGCTTAGTCTTGCCTATCCTCTEST: gi|207836568|gb|GD806565.1|GD806565
genomic: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGGgtatgtgttt ... tctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
EST: GCTGGAAGTCTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGG GCCTTTGCTTAGTCTTGCCTATCCTCTEST: gi|298176531|gb|HO023118.1|HO023118
genomic: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGGgtatgtgttt ... tctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
EST: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGG GCCTTTGCTTAGTCTTGCCTATCCTCTEST: gi|298181555|gb|HO025730.1|HO025730
genomic: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGGgtatgtgttt ... tctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
EST: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGG GCCTTTGCTTAGTCTTGCCCATCCTCT
genomic: GCTGGAAGTTTCCTCAAGGTGGTTCTAAAAAATTTTGATGTTCTCGCTGGgtatgtgttt ... tctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
ttttttctttgtgtattaactgatgatacctttggcttttgggtttctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
tttctcttgc CT-rich tract
tgtattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtaccccaatgactaaattaaccatatttttcatgttcagtgtgttttttctttgtgtattaactgatgatacctttggcttttgggtttctcttgcagGCCTTTGCTTAGTCTTGCCTATCCTCT
- tacccca
- - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttttg