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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttttttttttttcactctcttactgctatttttatttatttatatgcttttatatctgattttgatggtattgattttcaaatgggtatgctcagGTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCTGAAGTTGATACTATAGCAGTGTCAAAAACTGCTTCTTCTTCTGCTCCGG

Basic information

species Glycine max
transcript GLYMA04G16670.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323163|gb|FK017389.1|FK017389
EST:     TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCG                         GTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT
genomic: TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCGgtattctttt ... gtatgctcagGTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT
EST: gi|20812255|gb|BQ296725.1|BQ296725
EST:     TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCG                         GTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT
genomic: TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCGgtattctttt ... gtatgctcagGTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT
EST: gi|151410033|gb|EV279841.1|EV279841
EST:     TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCG                         GTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT
genomic: TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCGgtattctttt ... gtatgctcagGTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT
EST: gi|20812245|gb|BQ296723.1|BQ296723
EST:     TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCG                         GTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT
genomic: TTCACTCTCCTTCTTCCCTCTCAACTTCCCATCTATTTCCCACAACTTCGgtattctttt ... gtatgctcagGTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatgcttttatatctgattttgatggtattgattttcaaatgggtatgctcagGTGCGTTCATCTTCACTGCACTTCAGGTGCGTTCCAATCAAAGCCATGGCTGAAGTTGATACTATAGCAGTGTCAAAAACTGCTTCTTCTTCTGCTCCGG
                            tattgat  putative branch site (score: 3)
       ttttatatctgatttt  TA-rich tract