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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA

Basic information

species Glycine max
transcript GLYMA04G14640.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
-tgtttgtgattg-atctgc-tatggttacgctttcttgtgc----ttatccaattaccttattacataatcta-acttgttgtcgtg-gatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA
 |||    |||||    ||| ||||||  |||     | |      || |       |  |  |      | |    | ||  | ||| ||||  |     |  | | |  | |   |    ||||| ||||| ||||| |||||||||||||| ||||||   |||||||||||||||||||| ||||| ||||||||          
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC---------

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g02510.2 (Oryza sativa), 3'ss of exon 1
tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaa-----cttgttgtc-gtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA------
          | ||||| | ||| |      |       |||   |      |||  |   ||||  |     ||| | ||  |||  ||     ||  ||||| ||||||  || |||||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| ||       
----------taatctggtgtggatttttgctgcaactgttagtaagagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgta-ggtaagGTAA-GCCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAG

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 3'ss of exon 1
tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaa-----cttgttgtc-gtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA-
      | | | ||||| | ||| |      |       |||   |      |||  |   ||||  |     ||| | ||  |||  ||     ||  ||||| ||||||  || |||||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| ||  
-----ttcagtaatctggtgtggatttttgctgcaactgttagtaagagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgta-gGTAAGGTAA-GCCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCC

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
----tg-tttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact-tgttgtcgtgga--tgacctgttatgtgtaagGTAAGCCAAAGCC----ATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA
    || ||||  || |  |||||  | | |||           ||  |   |    || ||    |     |    || ||  | |   |||| ||        ||||||||  | ||      ||||| ||||| ||||| ||||||||||| || ||||||   |||||||||||||||||||| ||||| ||||||            
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
------tgtttgtgattgatctgctatggttacgctttcttgtgc-ttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA
      ||   |    |  |    | | ||| |  |    ||  | ||   |   |    |  | |     ||     ||||| |  |   ||  || |   | |  | |||     |  ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||       
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA-------

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 1
---------tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataat--ctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA
         |||| |    |  |    | | ||| |  |    | || |  ||   |   || |   | |      | |  ||  || || ||||  | | || |   | |   ||    |   ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| ||||||||          
agatggagctgttggcagctcgttgattcttgttcccgtggtgtttgttgttcgtctcggctgacgccgttgctgttgatgtggcgttgttgatgtgcagGTAAGGAGAGGAAGAGGGCGAA--ATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC---------

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
-----------tgtttgtgattgatctgctatggttacgctttcttgtgc-ttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA
           ||   |    |  |    | | ||| |  |    ||  | ||   |   |    |  | |     ||     ||||| |  |   ||  || |   | |  | |||     |  ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| ||||||            
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
---tgtttgtga---ttgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA--
   ||||| |||   ||||  |  |||  ||    || |||| |||  |  ||     | || |  | || |||  ||| ||| ||  |||  | || || | |   | ||   |||  |||   ||||| |||||||||||||||||||| ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||   
ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaa--gtttcatcatttgatttaaagtgt-gtc-tgattgatgttttttg-gcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 1
tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA------
  | | |  |   || | | |  ||  | ||  ||    ||||    | ||     || ||     || ||||  | ||   |    |||  ||        | |   |||||||||||||||||||||||||| | || ||||| ||||||   || || |||||||| ||||| || || ||||| || || || ||       
--tcttttttcattcagattt--ttgtgtttcttttgagttattttgtgacggagctaaatcgcaaaatttgtgatggtattttgtttgtgctgccatttacagGT--AAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAA

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1
-tgtttgtgattgat-ctgctatggtt-acgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA---
    |     ||||| || |  | |||  |    |    ||  |      |||  |   |    ||   ||| |   ||    ||||   ||||    | | |   |||     ||||||| ||||||||||| || || |||||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| |||   
gccctccgccttgatgcttcagtagtttgcatggtgcattgtatcagggtttaggtctgtgggaaaaaaaacgtagggtttctgatgg--tgttgctcgcagGTCTAGC----ACCATGGTGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------------------------------------------tgtttgtgattgatctgctatggttacgctttctt-----gtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacct-----gttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA---
                                                                                    |||  | ||| |     | |  |||   |   ||      | |   ||| | ||  | |      |   |    ||||||  ||  |  |  |     || ||    |      | | || ||||||| |||||||||||||| ||||| || ||||| |||   ||| ||||||| |||||||||| ||| |||||||| ||||| ||    
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaaacgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAG-CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA---
                                                                              ||   ||    || |||   | |  ||||    |       | | |||  ||  |   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| |||   
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtt--tgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAG-CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA---------
                                                                              ||   ||    || |||   | |  ||||    |       | | |||  ||  |   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| |||         
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtt--tgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1
-tgtttgtgattgatctgctatggttacgctt-tcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA---
 |||    || ||   |||    |||   ||| ||| |   |  ||  ||    || | |     | | || |   |  || |  | |    ||| |  | |||  ||     ||||||| |||||||| ||||||||||||||||| ||||||   ||| |||||||||||||||||| |||||||||||| ||||| ||    
ttgtgatggagtggcgtgccgatgttgttcttgtctcgcattcctcatatagggtt-taagggtttatgacataacgatgtcggagtcggtctattttcagGGTTGGC----ACCATGGTGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact--tgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA----
    |||||| ||   ||  |  ||  |  || ||||  | || |    | |       |   ||  | |  || |||||    |    || | ||| |  |   ||   || | ||||| |||||||||||||||||||||||||| ||||||   ||| ||||||| |||||||||| ||||||||| || ||||| ||     
----tgtgatggagtggc-gtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAAC-ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4395852|gb|AI494849.1|AI494849
EST:     ACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: ACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|213592187|gb|DB965978.1|DB965978
EST:     ACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAACGGACACTT
genomic: ACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|254337993|gb|GR845456.1|GR845456
EST:     CGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|15814215|gb|BI786490.1|BI786490
EST:     TGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: TGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|19268693|gb|BM884949.1|BM884949
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|22524921|gb|BU083732.1|BU083732
EST:     GTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|8284791|gb|BE022350.1|BE022350
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|12774389|gb|BG239316.1|BG239316
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|19268958|gb|BM885214.1|BM885214
EST:     CTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|6724689|gb|AW309022.1|AW309022
EST:     TTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: TTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|4314143|gb|AI461262.1|AI461262
EST:     CTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|14008777|gb|BG725381.1|BG725381
EST:     CTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|9901290|gb|BE610258.1|BE610258
EST:     TGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: TGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|120533320|gb|EH261453.1|EH261453
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|6916448|gb|AW397978.1|AW397978
EST:     TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|193595404|gb|FK550881.1|FK550881
EST:     CTCCGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAACGGACACTT
genomic: CTCCGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|15285759|gb|BI469650.1|BI469650
EST:     GTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|4305959|gb|AI443836.1|AI443836
EST:     TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|16995671|gb|BM085043.1|BM085043
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|209705859|gb|BW675964.1|BW675964
EST:     GTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAACGGACACTT
genomic: GTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|15661801|gb|BI699172.1|BI699172
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|120533365|gb|EH261498.1|EH261498
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|19053098|gb|BM731765.1|BM731765
EST:     CTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|24136545|gb|BU927055.1|BU927055
EST:     GCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAACGGACACTT
genomic: GCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|20814298|gb|BQ298776.1|BQ298776
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|8827981|gb|BE211711.1|BE211711
EST:     TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|21678445|gb|BQ630796.1|BQ630796
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAACGGACACTT
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|7042619|gb|AW472513.1|AW472513
EST:     GTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|209709536|gb|BW681226.1|BW681226
EST:     CGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAACGGACACTT
genomic: CGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|21677230|gb|BQ629581.1|BQ629581
EST:     GCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|38192415|gb|CF921621.1|CF921621
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|11274510|gb|BF324863.1|BF324863
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|18734388|gb|BM528153.1|BM528153
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|8670219|gb|BE191326.1|BE191326
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|5677540|gb|AI938670.1|AI938670
EST:     GTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: GTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|120533479|gb|EH261612.1|EH261612
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|23732733|gb|BU764538.1|BU764538
EST:     TGCTGTTCCTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: TGCTGTTCCTGCGCGTGAACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
EST: gi|15204350|gb|BI427118.1|BI427118
EST:     AACAAGCCTCAG                         GTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT
genomic: AACAAGCCTCAGgtagctctca ... tatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA
                 atctaac  putative branch site (score: 2)
       ttattacataatctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
tgtttgt
- - - - - - -tctgcta
- - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggatg