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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

Basic information

species Glycine max
transcript GLYMA04G14640.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
--gtgattgatctgctatggttacg--ctttcttgtgcttatccaattacct-tattacataatctaa--cttgttgtcgtg-------gatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
  ||| | |||      ||  || |  ||  |   ||  ||||   ||     || |   | || | |   ||||  |||||       ||||  |     |  | | |  | |   |    ||||| ||||| ||||| |||||||||||||| ||||||   |||||||||||||||||||| ||||| ||||||||               
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC--------------

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g02510.2 (Oryza sativa), 3'ss of exon 1
gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaa-----cttgttgtc-gtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA-
     | ||||| | ||| |      |       |||   |      |||  |   ||||  |     ||| | ||  |||  ||     ||  ||||| ||||||  || |||||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || || 
-----taatctggtgtggatttttgctgcaactgttagtaagagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgta-ggtaagGTAA-GCCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAG

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 3'ss of exon 1
gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaa-----cttgttgtc-gtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
 | | | ||||| | ||| |      |       |||   |      |||  |   ||||  |     ||| | ||  |||  ||     ||  ||||| ||||||  || |||||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || |    
ttcagtaatctggtgtggatttttgctgcaactgttagtaagagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgta-gGTAAGGTAA-GCCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCC----

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
-------------------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
                    || | |     | | | |   |||||   | |||       ||       |  || |  |   || |||   ||     |  || |   |  | | |||     |  ||||| ||||| ||||| ||||||||||| || ||||||   |||||||||||||||||||| ||||| ||||||                 
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcg-gctccgtttgttgttcagctggatgacgtgg-ttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
-----------gtgattgatctgctatggttacgctttcttgtgc-ttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
           |    |  |    | | ||| |  |    ||  | ||   |   |    |  | |     ||     ||||| |  |   ||  || |   | |  | |||     |  ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||            
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA------------

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 1
gtgattgatctgctatggttacgct--ttcttgtgcttatccaattaccttattacataatctaac-ttgttgtcgtggatgacctgtt----atgt----gtaaggtaagCCAAAGCC----ATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
  ||| || ||| |       || |  ||||||| |   |    ||   |  |    |   || ||   ||||  || ||||    |||    ||||    ||||||  ||  | ||      ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| ||||||||               
-agatggagctgttggcagctcgttgattcttgttcccgtggtgtttgttgttcgtctcggctgacgccgttgctgttgatgtggcgttgttgatgtgcagGTAAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC--------------

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
-gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact--tgttgtcgtggatgacctgtt-atgtgta-aggtaagCCAAAGCC------------ATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
   | | || |||         || |   |  || |       |   ||  || |         ||  ||  |||   | ||   |||| ||||||| |||||||    ||              ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| ||||||                 
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
             | ||||  |  |||  ||    || |||| |||  |  || |   | || |  | || |||  ||| ||| ||  |||  | || || | |   | ||   |||  |||   ||||| |||||||||||||||||||| ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||  |   
ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagt--ttcatcatttgatttaaagtgt-gtc-tgattgatgttttttg-gcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG---

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 1
--gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA-
   |  || ||     ||  ||  | ||  ||    ||||    | ||     || ||     || ||||  | ||   |    |||  ||        | |   |||||||||||||||||||||||||| | || ||||| ||||||   || || |||||||| ||||| || || ||||| || || || || || || 
tcttttttcattcag-atttttgtgtttcttttgagttattttgtgacggagctaaatcgcaaaatttgtgatggtattttgtttgtgctgccatttacagGT--AAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAA

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1
----------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
           ||||   || |   |    | | |   ||||          |||  |   |    ||   ||| |   ||    ||||   ||||    | | |   |||     ||||||| ||||||||||| || || |||||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| |||||   
gccctccgccttgatgcttcagtagtttgcatggtgcattgtatcagggt--ttaggtctgtgggaaaaaaaacgtagggtttctgatgg--tgttgctcgcagGTCTAGC----ACCATGGTGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC--

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------------------gtgattgatctg-ctatggttacgctttctt-----gtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacct-----gttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
                                                                                        |    || |||| | |  |||   |   ||      | |   ||| | ||  | |      |   |    ||||||  ||  |  |  |     || ||    |      | | || ||||||| |||||||||||||| ||||| || ||||| |||   ||| ||||||| |||||||||| ||| |||||||| ||||| || ||   
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaaacgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC--

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------------------------------------------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaag-
                                                                                   ||    || |||   | |  ||||    |       | | |||  |  ||   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| |||||   
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggt--ttgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC--

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------------------------------------------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaag-
                                                                                   ||    || |||   | |  ||||    |       | | |||  |  ||   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| ||||| ||    
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggt--ttgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1
--gtgat----tgatctgctatggttacgctt-tcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
  |||||    ||   |||    |||   ||| ||| |   |  ||  ||    || | |     | | || |   |  || |  | |    ||| |  | |||  ||     ||||||| |||||||| ||||||||||||||||| ||||||   ||| |||||||||||||||||| |||||||||||| ||||| || ||   
ttgtgatggagtggcgtgccgatgttgttcttgtctcgcattcctcatatagggtt-taagggtttatgacataacgatgtcggagtcggtctattttcagGGTTGGC----ACCATGGTGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC--

upper sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
-gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact--tgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
 ||||| ||  ||   |  ||  |  || ||||  | || |    | |       |   ||  | |  || |||||    |    || | ||| |  |   ||   || | ||||| |||||||||||||||||||||||||| ||||||   ||| ||||||| |||||||||| ||||||||| || ||||| || || | 
tgtgatggag-tggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAAC-ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814215|gb|BI786490.1|BI786490
EST:     TGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|12774389|gb|BG239316.1|BG239316
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|20814298|gb|BQ298776.1|BQ298776
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|18734388|gb|BM528153.1|BM528153
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|6724689|gb|AW309022.1|AW309022
EST:     TTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|23732733|gb|BU764538.1|BU764538
EST:     TGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|120533479|gb|EH261612.1|EH261612
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|21678445|gb|BQ630796.1|BQ630796
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|38192415|gb|CF921621.1|CF921621
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|4293744|gb|AI437949.1|AI437949
EST:     GCGTGAACAAGCCTCAG                         CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTA
genomic: GCGTGAACAAGCCTCAGgtagctctca ... gtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTA
EST: gi|209709536|gb|BW681226.1|BW681226
EST:     CGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CGTCACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|22524921|gb|BU083732.1|BU083732
EST:     GTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|8670219|gb|BE191326.1|BE191326
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|8827981|gb|BE211711.1|BE211711
EST:     TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|19268693|gb|BM884949.1|BM884949
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|19268958|gb|BM885214.1|BM885214
EST:     CTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|16995671|gb|BM085043.1|BM085043
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|9901290|gb|BE610258.1|BE610258
EST:     TGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|11274510|gb|BF324863.1|BF324863
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|14008777|gb|BG725381.1|BG725381
EST:     CTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|19053098|gb|BM731765.1|BM731765
EST:     CTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|213592187|gb|DB965978.1|DB965978
EST:     ACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: ACTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|120533320|gb|EH261453.1|EH261453
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|4314143|gb|AI461262.1|AI461262
EST:     CTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|6916448|gb|AW397978.1|AW397978
EST:     TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: TTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|120533365|gb|EH261498.1|EH261498
EST:     AGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: AGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|5677540|gb|AI938670.1|AI938670
EST:     GTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|8284791|gb|BE022350.1|BE022350
EST:     GCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: GCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg
EST: gi|17021504|gb|BM092538.1|BM092538
EST:     TGAACAAGCCTCAG                         CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTA
genomic: TGAACAAGCCTCAGgtagctctca ... gtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTA
EST: gi|15661801|gb|BI699172.1|BI699172
EST:     CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTCAGGTAAG                     
genomic: CTTTTCTCAGCTGCTGTTCCTGCGCGTGAACAAGCCTC-----AGgtagctctca ... gtaagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA
            atctaac  putative branch site (score: 2)
     ttacataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
gtgattg
- - - - tctgcta
- - - - - - - - - - - - - -cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtta