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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgaactcttctctctctctctctctccgtttaggtttctctctcaatttcgaaaccccgattttctctcaattcgaatccgcgattcatcgtaacccaaatactaaatagttattatctctctgcgtttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG

Basic information

species Glycine max
transcript GLYMA04G12950.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411377|gb|EV281188.1|EV281188
EST:     ATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: ATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|151401177|gb|EV270991.1|EV270991
EST:     TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|192322728|gb|FK014419.1|FK014419
EST:     ACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: ACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|209712170|gb|BW681376.1|BW681376
EST:     TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|193444264|gb|FK409744.1|FK409744
EST:     TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|17023914|gb|BM094948.1|BM094948
EST:     TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: TCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|298180901|gb|HO022340.1|HO022340
EST:     CACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: CACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|213605925|gb|DB956639.1|DB956639
EST:     AAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: AAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|254328123|gb|GR835088.1|GR835088
EST:     CTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: CTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|16347945|gb|BI973540.1|BI973540
EST:     CTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: CTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|16347984|gb|BI973579.1|BI973579
EST:     CTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: CTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|298173875|gb|HO017211.1|HO017211
EST:     ACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: ACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
EST: gi|209727249|gb|BW663310.1|BW663310
EST:     AAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAG                         CAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC
genomic: AAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGgttcgaactc ... tttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgattcatcgtaacccaaatactaaatagttattatctctctgcgtttctttcagCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG
                   tactaaa  putative branch site (score: 1)
                                ttatctctctgcgttt  putative PPT
                aaatactaaatagtta  TA-rich tract