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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccactttctctctccttgtttttgttcttcacatttaggttttaattaattacaagttgaatccagcagGTCGCGTGCTTCAGCCCTCCGTTCTCGCATCCGGTGTTGTACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCTACCTCCGTGAA

Basic information

species Glycine max
transcript GLYMA04G09130.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23063730|gb|BU578612.1|BU578612
EST:     CATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTT                         GTCGCGTGCTTCAGCCCTCCGTTCTCGCATCCGGTGTTGTACTACTCTCAC
genomic: CATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTTgtactccact ... aatccagcagGTCGCGTGCTTCAGCCCTCCGTTCTCGCATCCGGTGTTGTACTACTCTCAC
EST: gi|6482637|gb|AW201882.1|AW201882
EST:     CATTTGGGGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTT                         C
genomic: CATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTTgtactccact ... aatccagcag-
EST: gi|6482637|gb|AW201882.1|AW201882
EST:     CATTTGGGGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTT                         C
genomic: CATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTTgtactccact ... aatccagcag-
EST: gi|6482637|gb|AW201882.1|AW201882
EST:     CATTTGGGGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTT                         C
genomic: CATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTTgtactccact ... aatccagcag-
EST: gi|6482637|gb|AW201882.1|AW201882
EST:     CATTTGGGGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTT                         C
genomic: CATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTTgtactccact ... aatccagcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtttttgttcttcacatttaggttttaattaattacaagttgaatccagcagGTCGCGTGCTTCAGCCCTCCGTTCTCGCATCCGGTGTTGTACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCTACCTCCGTGAA
                             aattaat  putative branch site (score: 3)
                  atttaggttttaatta  TA-rich tract