1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcattatatttcggtttgatttgatgcttttgcttagatagttgtattgttatttttgctttctatgaggttctttaatgataaaatctatccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCT
species | Glycine max |
transcript | GLYMA04G08530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|213597525|gb|DB964430.1|DB964430
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|298178450|gb|HO024185.1|HO024185
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|298170636|gb|HO019260.1|HO019260
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|151394888|gb|EV264759.1|EV264759
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|298178024|gb|HO023873.1|HO023873
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|14011293|gb|BG726224.1|BG726224
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|192327625|gb|FK020658.1|FK020658
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|298185114|gb|HO030327.1|HO030327
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|17518633|gb|BM187675.1|BM187675
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|298182837|gb|HO031572.1|HO031572
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGATAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGCCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|192303639|gb|FG994533.1|FG994533
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTGTGTCAGGTTGCACAAEST: gi|151412807|gb|EV282619.1|EV282619
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATGCGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|192299132|gb|FG992878.1|FG992878
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|298191108|gb|HO038587.1|HO038587
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|8282557|gb|BE020118.1|BE020118
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
genomic: AAGTACGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
attgttatttttgctttctatgaggttctttaatgataaaatctatccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCT
ctttaat putative branch site (score: 4)
tctatcc putative PPT
ttctttaatgataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattatatttcggtttgatttgatgcttttgcttagatagttgtattgttatttttgctttctatgaggttctttaatgataaaatctatccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - tgcttag