1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttatgatgtcgttgcttttgttgcaccttcctttgctccttcagaatgttcctgaatgggtgtatgttccactttaaactttttttattttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA
species | Glycine max |
transcript | GLYMA04G05530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTAAGACTACCGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAG ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAG
genomic: TTTCTAAGACTACCGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAGgttcaccact ... ttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAG
aatgttcctgaatgggtgtatgttccactttaaactttttttattttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA
ctttttttattttatc CT-rich tract
actttaaacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatgatgtcgttgcttttgttgcaccttcctttgctccttcagaatgttcctgaatgggtgtatgttccactttaaactttttttattttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA
- - tgatgtc
- - - - - -gttgctt
- - - - - - - - - -tgttgca
- - - - - - - - - - - - - ccttcct
- - - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - tcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccact