1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtggggactggggaaggaagtgcaggtggaaattttgtaaaatgtatgtagttatctgctgtaagttcagtctaacatttttattttcatttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG
species | Glycine max |
transcript | GLYMA04G04170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATGNTAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|207830846|gb|GD803742.1|GD803742
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGNGGAGAACEST: gi|208027955|gb|GD822153.1|GD822153
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|193334350|gb|FK300114.1|FK300114
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAAGTTAAAAEST: gi|193548975|gb|FK505382.1|FK505382
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAA-GTTAAAA
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|207750222|gb|GD723390.1|GD723390
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|193415667|gb|FK376273.1|FK376273
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|193334383|gb|FK297585.1|FK297585
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|208104141|gb|GD902704.1|GD902704
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|193346057|gb|FK310501.1|FK310501
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|208241024|gb|GE039574.1|GE039574
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|193409385|gb|FK370407.1|FK370407
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCAAAGTTAAAAGAGGAGAACEST: gi|193499684|gb|FK461311.1|FK461311
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCEST: gi|207740274|gb|GD714212.1|GD714212
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGEST: gi|193313919|gb|FK281652.1|FK281652
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAG
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|208156795|gb|GD955075.1|GD955075
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|193680024|gb|FK625260.1|FK625260
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAA--GAGGAGAACEST: gi|10237462|gb|BE806350.1|BE806350
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACEST: gi|207835788|gb|GD806513.1|GD806513
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
EST: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAG GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
genomic: GGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGgtgatgtttt ... tttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAAC
tatgtagttatctgctgtaagttcagtctaacatttttattttcatttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG
gtctaac putative branch site (score: 2)
tttttattttcattt CT-rich tract
agtctaacatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtggggactggggaaggaagtgcaggtggaaattttgtaaaatgtatgtagttatctgctgtaagttcagtctaacatttttattttcatttattccagGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-gtgggga
- - - - - -gggaagg
- - - - - - - - - - -tgcaggt
- - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctgt