1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctagatgcatatttatatttgttttcaaccactgtgttggggtttgaagaagtgactaacaggttattggcttctgacttcgattcttttgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACACTATTCTGAAGATGCTGGACCGGGCACTTGAGGTCAAGGCCTTGCTGAA
species | Glycine max |
transcript | GLYMA04G03280.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|298193060|gb|HO033494.1|HO033494
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|298192551|gb|HO036633.1|HO036633
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTCGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|9565331|gb|BE474840.1|BE474840
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|193645106|gb|FK587848.1|FK587848
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|298185772|gb|HO028083.1|HO028083
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|6455284|gb|AW185967.1|AW185967
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAAAAGGATTTTGATAAGGACEST: gi|298166533|gb|HO009972.1|HO009972
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTT-AGATGATTTTGATAAGGAC
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|298169111|gb|HO020471.1|HO020471
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACAEST: gi|7684725|gb|AW755373.1|AW755373
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACA
EST: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTC ACAAAAGTTGGGCGTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGA
genomic: TGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCgtaagcctac ... tgttctgcagACAAA-GTTGGGC-TGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGA
tgaagaagtgactaacaggttattggcttctgacttcgattcttttgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACACTATTCTGAAGATGCTGGACCGGGCACTTGAGGTCAAGGCCTTGCTGAA
ttcttttgttctgc CT-rich tract
attctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagatgcatatttatatttgttttcaaccactgtgttggggtttgaagaagtgactaacaggttattggcttctgacttcgattcttttgttctgcagACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACACTATTCTGAAGATGCTGGACCGGGCACTTGAGGTCAAGGCCTTGCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - tgcatat
- - - - - - - - - - - - - caaccac
- - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgac