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...tttttactgtagcacaattttcttccggattttatttatggacttcaattgctttagatgagactggtgactgactttggattaaaaacataaattgcagTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGATTTGAAATCTCTTCAAAGTGTTGGGCAGATTATTGGCGAAGTTCTCAG
species | Glycine max |
transcript | GLYMA04G03180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCG TCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGEST: gi|7285516|gb|AW598003.1|AW598003
genomic: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCGgtttgtctct ... taaattgcagTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATG
EST: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCG TCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGEST: gi|254341452|gb|GR850665.1|GR850665
genomic: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCGgtttgtctct ... taaattgcagTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATG
EST: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCG TCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGEST: gi|207784367|gb|GD759014.1|GD759014
genomic: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCGgtttgtctct ... taaattgcagTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATG
EST: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCG TCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATG
genomic: TCGGAAGAAACTTCTCCAGCACAAGGAATTGGAATCCAGAGTCCGATCCGgtttgtctct ... taaattgcagTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATG
caattgctttagatgagactggtgactgactttggattaaaaacataaattgcagTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGATTTGAAATCTCTTCAAAGTGTTGGGCAGATTATTGGCGAAGTTCTCAG
gactgac putative branch site (score: 2)
tttggattaaaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttactgtagcacaattttcttccggattttatttatggacttcaattgctttagatgagactggtgactgactttggattaaaaacataaattgcagTCAGGGAGAATTTGCGAGCTTCAAAGAAAGAGTTCAATAAAACAGAAGATGATTTGAAATCTCTTCAAAGTGTTGGGCAGATTATTGGCGAAGTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - ctgtagc
- - - - - - - - - -ttcttcc
- - - - - - - - - - - - - - - - - - - - gacttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca