1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattccttttgtcacatttccaactgattgtttgttctttgacaaattataggcttcacggtttcacccttctctgtttatgtttgtgtgtcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATGGAAGCACCGTAAACCTAGGATTGTGGGATACAGCTG
species | Glycine max |
transcript | GLYMA04G02530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATEST: gi|14258618|gb|BG881526.1|BG881526
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATEST: gi|208228807|gb|GE024227.1|GE024227
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG GACTATGTGCCCACCGTEST: gi|207827775|gb|GD800368.1|GD800368
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGT
EST: CACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATEST: gi|9563948|gb|BE473457.1|BE473457
genomic: CACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATEST: gi|192331824|gb|FK024928.1|FK024928
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATEST: gi|207836636|gb|GD806633.1|GD806633
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: CACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTTGGTGGAEST: gi|58021086|gb|CX707828.1|CX707828
genomic: CACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGG-TGGTGGA
EST: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATEST: gi|151393592|gb|EV263467.1|EV263467
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
attataggcttcacggtttcacccttctctgtttatgtttgtgtgtcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATGGAAGCACCGTAAACCTAGGATTGTGGGATACAGCTG
tttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattccttttgtcacatttccaactgattgtttgttctttgacaaattataggcttcacggtttcacccttctctgtttatgtttgtgtgtcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATGGAAGCACCGTAAACCTAGGATTGTGGGATACAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG